Index

C

cEpiabm module

E

epiabm::BasicHostProgressionSweep (C++ class) epiabm::BasicHostProgressionSweep::BasicHostProgressionSweep (C++ function) epiabm::BasicHostProgressionSweep::cellCallback (C++ function) epiabm::BasicHostProgressionSweep::cellExposedCallback (C++ function) epiabm::BasicHostProgressionSweep::cellInfectiousCallback (C++ function) epiabm::BasicHostProgressionSweep::operator() (C++ function) epiabm::BasicHostProgressionSweep::~BasicHostProgressionSweep (C++ function) epiabm::BasicSimulation (C++ class) epiabm::BasicSimulation::addSweep (C++ function) epiabm::BasicSimulation::addTimestepReporter (C++ function) epiabm::BasicSimulation::BasicSimulation (C++ function) epiabm::BasicSimulation::simulate (C++ function) epiabm::BasicSimulation::~BasicSimulation (C++ function) epiabm::Cell (C++ class) epiabm::Cell::Cell (C++ function), [1], [2] epiabm::Cell::compartmentCount (C++ function) epiabm::Cell::enqueuePerson (C++ function) epiabm::Cell::forEachExposed (C++ function) epiabm::Cell::forEachInfectious (C++ function) epiabm::Cell::forEachMicrocell (C++ function) epiabm::Cell::forEachNonInfectious (C++ function) epiabm::Cell::forEachPerson (C++ function) epiabm::Cell::getMicrocell (C++ function) epiabm::Cell::getPerson (C++ function) epiabm::Cell::index (C++ function) epiabm::Cell::initialize (C++ function) epiabm::Cell::initializeInfectiousGrouping (C++ function) epiabm::Cell::location (C++ function) epiabm::Cell::markDead (C++ function) epiabm::Cell::markExposed (C++ function) epiabm::Cell::markInfectious (C++ function) epiabm::Cell::markNonInfectious (C++ function) epiabm::Cell::markRecovered (C++ function) epiabm::Cell::microcells (C++ function) epiabm::Cell::numDead (C++ function) epiabm::Cell::numExposed (C++ function) epiabm::Cell::numInfectious (C++ function) epiabm::Cell::numRecovered (C++ function) epiabm::Cell::numSusceptible (C++ function) epiabm::Cell::people (C++ function) epiabm::Cell::personStatusChange (C++ function) epiabm::Cell::processQueue (C++ function) epiabm::Cell::sampleInfectious (C++ function) epiabm::Cell::sampleSusceptible (C++ function) epiabm::Cell::setLocation (C++ function) epiabm::Cell::~Cell (C++ function) epiabm::CellCompartmentReporter (C++ class) epiabm::CellCompartmentReporter::CellCompartmentReporter (C++ function) epiabm::CellCompartmentReporter::compartments (C++ function) epiabm::CellCompartmentReporter::report (C++ function) epiabm::CellCompartmentReporter::~CellCompartmentReporter (C++ function) epiabm::ConfigurationFactoryInterface (C++ class) epiabm::ConfigurationFactoryInterface::ConfigurationFactoryInterface (C++ function) epiabm::ConfigurationFactoryInterface::loadConfig (C++ function) epiabm::ConfigurationFactoryInterface::~ConfigurationFactoryInterface (C++ function) epiabm::DistanceMetrics (C++ class) epiabm::DistanceMetrics::Dist (C++ function) epiabm::DistanceMetrics::DistanceMetrics (C++ function) epiabm::DistanceMetrics::DistCovidsim (C++ function) epiabm::DistanceMetrics::DistEuclid (C++ function) epiabm::DistanceMetrics::~DistanceMetrics (C++ function) epiabm::HostProgressionConfig (C++ class) epiabm::HostProgressionConfig::asymptToRecovICDF (C++ member) epiabm::HostProgressionConfig::gpToDeathICDF (C++ member) epiabm::HostProgressionConfig::gpToHospICDF (C++ member) epiabm::HostProgressionConfig::gpToRecovICDF (C++ member) epiabm::HostProgressionConfig::hospToDeathICDF (C++ member) epiabm::HostProgressionConfig::hospToICUICDF (C++ member) epiabm::HostProgressionConfig::hospToRecovICDF (C++ member) epiabm::HostProgressionConfig::icuRecovToRecovICDF (C++ member) epiabm::HostProgressionConfig::icuToDeathICDF (C++ member) epiabm::HostProgressionConfig::icuToICURecovICDF (C++ member) epiabm::HostProgressionConfig::infectiousness_profile (C++ member) epiabm::HostProgressionConfig::latentPeriodICDF (C++ member) epiabm::HostProgressionConfig::mildToRecovICDF (C++ member) epiabm::HostProgressionConfig::prob_exposed_to_asympt (C++ member) epiabm::HostProgressionConfig::prob_exposed_to_gp (C++ member) epiabm::HostProgressionConfig::prob_exposed_to_mild (C++ member) epiabm::HostProgressionConfig::prob_gp_to_hosp (C++ member) epiabm::HostProgressionConfig::prob_gp_to_recov (C++ member) epiabm::HostProgressionConfig::prob_hosp_to_death (C++ member) epiabm::HostProgressionConfig::prob_hosp_to_icu (C++ member) epiabm::HostProgressionConfig::prob_hosp_to_recov (C++ member) epiabm::HostProgressionConfig::prob_icu_to_death (C++ member) epiabm::HostProgressionConfig::prob_icu_to_icurecov (C++ member) epiabm::HostProgressionConfig::use_ages (C++ member) epiabm::HostProgressionSweep (C++ class) epiabm::HostProgressionSweep::cellCallback (C++ function) epiabm::HostProgressionSweep::cellExposedCallback (C++ function) epiabm::HostProgressionSweep::cellInfectiousCallback (C++ function) epiabm::HostProgressionSweep::HostProgressionSweep (C++ function) epiabm::HostProgressionSweep::operator() (C++ function) epiabm::HostProgressionSweep::~HostProgressionSweep (C++ function) epiabm::Household (C++ class) epiabm::Household::addMember (C++ function) epiabm::Household::forEachMember (C++ function) epiabm::Household::Household (C++ function) epiabm::Household::isMember (C++ function) epiabm::Household::members (C++ function) epiabm::Household::microcellPos (C++ function) epiabm::Household::params (C++ function) epiabm::Household::~Household (C++ function) epiabm::HouseholdLinker (C++ class) epiabm::HouseholdLinker::linkHouseholds (C++ function) epiabm::HouseholdParams (C++ struct) epiabm::HouseholdParams::infectiousness (C++ member) epiabm::HouseholdParams::location (C++ member) epiabm::HouseholdParams::susceptibility (C++ member) epiabm::HouseholdSweep (C++ class) epiabm::HouseholdSweep::cellCallback (C++ function) epiabm::HouseholdSweep::cellInfectiousCallback (C++ function) epiabm::HouseholdSweep::HouseholdSweep (C++ function) epiabm::HouseholdSweep::operator() (C++ function) epiabm::HouseholdSweep::~HouseholdSweep (C++ function) epiabm::InfectionConfig (C++ class) epiabm::InfectionConfig::asymptInfectiousness (C++ member) epiabm::InfectionConfig::basicReproductionNum (C++ member) epiabm::InfectionConfig::falsePositiveRate (C++ member) epiabm::InfectionConfig::hostProgressionConfig (C++ member) epiabm::InfectionConfig::householdTransmission (C++ member) epiabm::InfectionConfig::InfectionConfig (C++ function) epiabm::InfectionConfig::infectionRadius (C++ member) epiabm::InfectionConfig::latentToSymptDelay (C++ member) epiabm::InfectionConfig::meanPlaceGroupSize (C++ member) epiabm::InfectionConfig::placeTransmission (C++ member) epiabm::InfectionConfig::probSymptomatic (C++ member) epiabm::InfectionConfig::spatial_distance_metric (C++ member) epiabm::InfectionConfig::symptInfectiousness (C++ member) epiabm::InfectionStatus (C++ enum) epiabm::InfectionStatus::Dead (C++ enumerator) epiabm::InfectionStatus::Exposed (C++ enumerator) epiabm::InfectionStatus::InfectASympt (C++ enumerator) epiabm::InfectionStatus::InfectGP (C++ enumerator) epiabm::InfectionStatus::InfectHosp (C++ enumerator) epiabm::InfectionStatus::InfectICU (C++ enumerator) epiabm::InfectionStatus::InfectICURecov (C++ enumerator) epiabm::InfectionStatus::InfectMild (C++ enumerator) epiabm::InfectionStatus::Recovered (C++ enumerator) epiabm::InfectionStatus::Susceptible (C++ enumerator) epiabm::InverseCDF (C++ class) epiabm::InverseCDF::assignExponent (C++ function), [1] epiabm::InverseCDF::choose (C++ function) epiabm::InverseCDF::getValues (C++ function) epiabm::InverseCDF::InverseCDF (C++ function), [1] epiabm::InverseCDF::mean (C++ function) epiabm::InverseCDF::operator[] (C++ function) epiabm::InverseCDF::RES (C++ member) epiabm::InverseCDF::setNegLog (C++ function) epiabm::JsonFactory (C++ class) epiabm::JsonFactory::JsonFactory (C++ function) epiabm::JsonFactory::loadConfig (C++ function), [1] epiabm::JsonFactory::~JsonFactory (C++ function) epiabm::LogFile (C++ class) epiabm::LogFile::Close (C++ function) epiabm::LogFile::configure (C++ function) epiabm::LogFile::disable_cout (C++ function) epiabm::LogFile::enable_cout (C++ function)

epiabm::LogFile::Instance (C++ function) epiabm::LogFile::isFileSet (C++ function) epiabm::LogFile::Level (C++ function) epiabm::LogFile::lock (C++ function) epiabm::LogFile::prepare (C++ function) epiabm::LogFile::setLevel (C++ function) epiabm::LogFile::unlock (C++ function) epiabm::Microcell (C++ class) epiabm::Microcell::cellPos (C++ function) epiabm::Microcell::compartmentCount (C++ function) epiabm::Microcell::forEachPerson (C++ function) epiabm::Microcell::getHousehold (C++ function) epiabm::Microcell::getPerson (C++ function) epiabm::Microcell::households (C++ function) epiabm::Microcell::initialize (C++ function) epiabm::Microcell::Microcell (C++ function), [1], [2] epiabm::Microcell::people (C++ function) epiabm::Microcell::personStatusChange (C++ function) epiabm::Microcell::~Microcell (C++ function) epiabm::NewInfectionSweep (C++ class) epiabm::NewInfectionSweep::cellCallback (C++ function) epiabm::NewInfectionSweep::cellPersonQueueCallback (C++ function) epiabm::NewInfectionSweep::NewInfectionSweep (C++ function) epiabm::NewInfectionSweep::operator() (C++ function) epiabm::NewInfectionSweep::~NewInfectionSweep (C++ function) epiabm::OutputFolderHandler (C++ class) epiabm::OutputFolderHandler::OpenOutputFile (C++ function) epiabm::OutputFolderHandler::OutputFolderHandler (C++ function) epiabm::PerCellCompartmentReporter (C++ class) epiabm::PerCellCompartmentReporter::compartments (C++ function) epiabm::PerCellCompartmentReporter::PerCellCompartmentReporter (C++ function) epiabm::PerCellCompartmentReporter::report (C++ function) epiabm::PerCellCompartmentReporter::setup (C++ function) epiabm::PerCellCompartmentReporter::teardown (C++ function) epiabm::PerCellCompartmentReporter::~PerCellCompartmentReporter (C++ function) epiabm::Person (C++ class) epiabm::Person::addPlace (C++ function) epiabm::Person::cellPos (C++ function) epiabm::Person::forEachPlace (C++ function) epiabm::Person::household (C++ function) epiabm::Person::microcell (C++ function) epiabm::Person::microcellPos (C++ function) epiabm::Person::params (C++ function) epiabm::Person::Person (C++ function) epiabm::Person::places (C++ function) epiabm::Person::removePlace (C++ function) epiabm::Person::removePlaceAllGroups (C++ function) epiabm::Person::setHousehold (C++ function) epiabm::Person::setStatus (C++ function) epiabm::Person::status (C++ function) epiabm::Person::updateStatus (C++ function) epiabm::Person::~Person (C++ function) epiabm::PersonParams (C++ struct) epiabm::PersonParams::age_group (C++ member) epiabm::PersonParams::infection_start_timestep (C++ member) epiabm::PersonParams::infectiousness (C++ member) epiabm::PersonParams::initial_infectiousness (C++ member) epiabm::PersonParams::next_status (C++ member) epiabm::PersonParams::next_status_time (C++ member) epiabm::PersonParams::susceptibility (C++ member) epiabm::Place (C++ class) epiabm::Place::addMember (C++ function) epiabm::Place::forEachMember (C++ function) epiabm::Place::forEachMemberGroup (C++ function) epiabm::Place::forEachMemberInGroup (C++ function) epiabm::Place::isMember (C++ function) epiabm::Place::memberGroups (C++ function) epiabm::Place::members (C++ function) epiabm::Place::membersInGroup (C++ function) epiabm::Place::Place (C++ function) epiabm::Place::populationPos (C++ function) epiabm::Place::removeMember (C++ function) epiabm::Place::removeMemberAllGroups (C++ function) epiabm::Place::sampleMembersInGroup (C++ function) epiabm::Place::~Place (C++ function) epiabm::PlaceSweep (C++ class) epiabm::PlaceSweep::cellCallback (C++ function) epiabm::PlaceSweep::cellInfectiousCallback (C++ function) epiabm::PlaceSweep::operator() (C++ function) epiabm::PlaceSweep::PlaceSweep (C++ function) epiabm::PlaceSweep::~PlaceSweep (C++ function) epiabm::Population (C++ class) epiabm::Population::cells (C++ function) epiabm::Population::forEachCell (C++ function) epiabm::Population::forEachPlace (C++ function) epiabm::Population::initialize (C++ function) epiabm::Population::places (C++ function) epiabm::Population::Population (C++ function) epiabm::Population::~Population (C++ function) epiabm::PopulationCompartmentReporter (C++ class) epiabm::PopulationCompartmentReporter::compartments (C++ function) epiabm::PopulationCompartmentReporter::PopulationCompartmentReporter (C++ function) epiabm::PopulationCompartmentReporter::report (C++ function) epiabm::PopulationCompartmentReporter::setup (C++ function) epiabm::PopulationCompartmentReporter::~PopulationCompartmentReporter (C++ function) epiabm::PopulationConfig (C++ class) epiabm::PopulationConfig::age_contacts (C++ member) epiabm::PopulationConfig::age_proportions (C++ member) epiabm::PopulationFactory (C++ class) epiabm::PopulationFactory::addCell (C++ function) epiabm::PopulationFactory::addCells (C++ function) epiabm::PopulationFactory::addHousehold (C++ function) epiabm::PopulationFactory::addHouseholds (C++ function) epiabm::PopulationFactory::addMicrocell (C++ function) epiabm::PopulationFactory::addMicrocells (C++ function) epiabm::PopulationFactory::addPeople (C++ function) epiabm::PopulationFactory::addPerson (C++ function) epiabm::PopulationFactory::addPlace (C++ function) epiabm::PopulationFactory::addPlaces (C++ function) epiabm::PopulationFactory::makePopulation (C++ function), [1] epiabm::RandomGenerator (C++ class) epiabm::RandomGenerator::generator (C++ function) epiabm::RandomGenerator::randf (C++ function) epiabm::RandomGenerator::randi (C++ function), [1] epiabm::RandomGenerator::RandomGenerator (C++ function), [1] epiabm::RandomGenerator::~RandomGenerator (C++ function) epiabm::RandomManager (C++ class) epiabm::RandomManager::g (C++ function) epiabm::RandomManager::RandomManager (C++ function) epiabm::RandomManager::~RandomManager (C++ function) epiabm::RandomSeedSweep (C++ class) epiabm::RandomSeedSweep::cellCallback (C++ function) epiabm::RandomSeedSweep::cellPersonCallback (C++ function) epiabm::RandomSeedSweep::operator() (C++ function) epiabm::RandomSeedSweep::RandomSeedSweep (C++ function) epiabm::RandomSeedSweep::~RandomSeedSweep (C++ function) epiabm::SimulationConfig (C++ class) epiabm::SimulationConfig::infectionConfig (C++ member) epiabm::SimulationConfig::populationConfig (C++ member) epiabm::SimulationConfig::randomManager (C++ member) epiabm::SimulationConfig::SimulationConfig (C++ function) epiabm::SimulationConfig::timestepsPerDay (C++ member) epiabm::SpatialSweep (C++ class) epiabm::SpatialSweep::cellCallback (C++ function) epiabm::SpatialSweep::cellInfectiousCallback (C++ function) epiabm::SpatialSweep::operator() (C++ function) epiabm::SpatialSweep::SpatialSweep (C++ function) epiabm::SpatialSweep::~SpatialSweep (C++ function) epiabm::SweepInterface (C++ class) epiabm::SweepInterface::bind_population (C++ function) epiabm::SweepInterface::cellCallback (C++ function) epiabm::SweepInterface::operator() (C++ function) epiabm::SweepInterface::SweepInterface (C++ function), [1] epiabm::SweepInterface::~SweepInterface (C++ function) epiabm::ThreadedSimulation (C++ class) epiabm::ThreadedSimulation::addSweep (C++ function) epiabm::ThreadedSimulation::addTimestepReporter (C++ function) epiabm::ThreadedSimulation::simulate (C++ function) epiabm::ThreadedSimulation::ThreadedSimulation (C++ function) epiabm::ThreadedSimulation::~ThreadedSimulation (C++ function) epiabm::TimestepReporterInterface (C++ class) epiabm::TimestepReporterInterface::report (C++ function) epiabm::TimestepReporterInterface::setup (C++ function) epiabm::TimestepReporterInterface::teardown (C++ function) epiabm::TimestepReporterInterface::TimestepReporterInterface (C++ function), [1] epiabm::TimestepReporterInterface::~TimestepReporterInterface (C++ function) epiabm::ToyPopulationFactory (C++ class) epiabm::ToyPopulationFactory::makePopulation (C++ function)

M

module cEpiabm